Skills
Computing Skills
- OS & Programs
- Windows, Macintosh, Basic, MS-DOS, UNIX and Linux.
- Supercomputers, Clusters
- User.
- Programming Languages
- Python, R, C (Basic), perl (Basic).
- Frameworks
- Developer of ProteinModelerABC, available from https://github.com/DavidFerreiro/ProteinModelerABC. Written in Python, C and R.
Genetics and Molecular Evolution
- Development and applications of substitution models of evolution.
- Phylogenetic tree recontruction and estimation of evolutionary parameters.
- DNA and protein evolution.
- Population genetics
- Virus evolution.
- Virus molecular adaptation.
Structural Biology
- Homology Modelling
- Modeller, Swiss-Model.
- Protein Stability Calculation
- DeltaGREM, FoldX, Modeller.
- Molecular Dynamics Simultions
- Amber23, AmberTools23.
Data analysis
- Experience with data libraries (Python:pandas, numpy; R: tidyverse).